Television Without Pity Alias recaps written by the almighty Regina.
Two Evil Monks illustrated episode guides.
The Safe House -- all Vartan, all the time. devoted to Michael Vartan, a.k.a. Agent Michael Vaughn or "Hot Stuff".
SD-6 Message Boards including spoiler discussions and fan fiction
Cover Me fan fiction archive, organized by category/relationship.
Alias Online, a good overview.
Alias Media home for all the screen captures you could ever want. Ever.